IL_8OO0_277

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUU*AAC

Length

7 nucleotides

Bulged bases

8OO0|1|1|A|2674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_277 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2224

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OO0|1|1|G|2673
8OO0|1|1|A|2674
8OO0|1|1|U|2675
8OO0|1|1|U|2676
*
8OO0|1|1|A|2698
8OO0|1|1|A|2699
8OO0|1|1|C|2700

Current chains

Chain 1

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L44-like protein