IL_8OO0_282

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CAGUG

Length

8 nucleotides

Bulged bases

8OO0|1|1|G|3036, 8OO0|1|1|U|3037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_282 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2707

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8OO0|1|1|U|3021
8OO0|1|1|U|3022
8OO0|1|1|G|3023
*
8OO0|1|1|C|3034
8OO0|1|1|A|3035
8OO0|1|1|G|3036
8OO0|1|1|U|3037
8OO0|1|1|G|3038

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein