IL_8OO0_289

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8OO0|1|2|U|957

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_289 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2857

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8OO0|1|2|G|866
8OO0|1|2|A|867
*
8OO0|1|2|U|956
8OO0|1|2|U|957
8OO0|1|2|U|958

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13-like protein

Chain Sb

Ribosomal protein s27-like protein