IL_8P03_017

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_017 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.1819

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8P03|1|2|C|235
8P03|1|2|C|236
8P03|1|2|G|237
*
8P03|1|2|C|272
8P03|1|2|G|273
8P03|1|2|G|274

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6