IL_8P03_050

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8P03|1|2|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_050 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2527

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8P03|1|2|G|921
8P03|1|2|A|922
8P03|1|2|C|923
*
8P03|1|2|G|1010
8P03|1|2|U|1011
8P03|1|2|U|1012
8P03|1|2|U|1013

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

ribosomal protein uS15

Chain c

40S ribosomal protein S27