IL_8P03_082

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GACC*GCGUC

Length

9 nucleotides

Bulged bases

8P03|1|2|U|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_082 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2658

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8P03|1|2|G|1409
8P03|1|2|A|1410
8P03|1|2|C|1411
8P03|1|2|C|1412
*
8P03|1|2|G|1425
8P03|1|2|C|1426
8P03|1|2|G|1427
8P03|1|2|U|1428
8P03|1|2|C|1429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS9

Chain V

40S ribosomal protein eS19