IL_8P09_003

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

8P09|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3237

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8P09|1|2|C|37
8P09|1|2|A|38
8P09|1|2|A|39
8P09|1|2|A|40
*
8P09|1|2|U|504
8P09|1|2|G|505
8P09|1|2|A|506
8P09|1|2|C|507
8P09|1|2|G|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

40S ribosomal protein S9

Chain k

ATP binding cassette subfamily E member 1