IL_8P09_013

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_013 not in the Motif Atlas

Geometric match to IL_3R1C_032

Geometric discrepancy: 0.1122

The information below is about IL_3R1C_032

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

8P09|1|2|U|152
8P09|1|2|G|153
8P09|1|2|U|154
*
8P09|1|2|A|164
8P09|1|2|G|165
8P09|1|2|A|166

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain a

40S ribosomal protein S24