IL_8P09_014
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGAC*GGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_014 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.2601
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8P09|1|2|C|187
8P09|1|2|U|188
8P09|1|2|G|189
8P09|1|2|A|190
8P09|1|2|C|191
*
8P09|1|2|G|204
8P09|1|2|G|205
8P09|1|2|A|206
8P09|1|2|U|207
8P09|1|2|G|208
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S8
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