IL_8P09_021

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8P09|1|2|C|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_021 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2068

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8P09|1|2|U|356
8P09|1|2|U|357
8P09|1|2|U|358
8P09|1|2|C|359
8P09|1|2|G|360
8P09|1|2|A|361
*
8P09|1|2|U|383
8P09|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11