IL_8P09_025
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 8P09|1|2|U|478
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_025 not in the Motif Atlas
- Homologous match to IL_4V88_407
- Geometric discrepancy: 0.112
- The information below is about IL_4V88_407
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8P09|1|2|U|477
8P09|1|2|U|478
8P09|1|2|A|479
*
8P09|1|2|U|501
8P09|1|2|A|502
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain L
- 40S ribosomal protein S9
- Chain a
- 40S ribosomal protein S24
- Chain k
- ATP binding cassette subfamily E member 1
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