IL_8P09_031

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

8P09|1|2|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_031 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.271

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8P09|1|2|G|553
8P09|1|2|A|554
8P09|1|2|G|555
*
8P09|1|2|C|575
8P09|1|2|G|576
8P09|1|2|A|577
8P09|1|2|G|578
8P09|1|2|G|579
8P09|1|2|A|580
8P09|1|2|U|581
8P09|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain i

40S ribosomal protein S30