IL_8P09_034

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8P09|1|2|U|597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_034 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2821

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8P09|1|2|G|596
8P09|1|2|U|597
8P09|1|2|C|598
*
8P09|1|2|G|625
8P09|1|2|C|626

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain L

40S ribosomal protein S9

Chain i

40S ribosomal protein S30