IL_8P09_052

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8P09|1|2|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_052 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1224

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8P09|1|2|G|920
8P09|1|2|G|921
8P09|1|2|A|922
8P09|1|2|C|923
*
8P09|1|2|G|1010
8P09|1|2|U|1011
8P09|1|2|U|1012
8P09|1|2|U|1013
8P09|1|2|U|1014

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

ribosomal protein uS15

Chain c

40S ribosomal protein S27