IL_8P09_074

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8P09|1|2|C|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_074 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.1351

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

8P09|1|2|U|1325
8P09|1|2|G|1326
8P09|1|2|C|1327
8P09|1|2|A|1328
8P09|1|2|U|1329
*
8P09|1|2|A|1494
8P09|1|2|U|1495
8P09|1|2|G|1496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain M

40S ribosomal protein eS10

Chain W

40S ribosomal protein uS10

Chain e

40S ribosomal protein S29

Chain f

ribosomal protein eS31

Chain j

Eukaryotic translation initiation factor 4C