IL_8P09_088

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_088 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0944

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8P09|1|2|G|1599
8P09|1|2|G|1600
8P09|1|2|G|1601
8P09|1|2|A|1602
8P09|1|2|U|1603
8P09|1|2|C|1604
8P09|1|2|G|1605
*
8P09|1|2|C|1624
8P09|1|2|A|1625
8P09|1|2|U|1626
8P09|1|2|G|1627
8P09|1|2|A|1628
8P09|1|2|A|1629
8P09|1|2|C|1630

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19