IL_8P09_104

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUCGGCGC*GCCCGAA

Length

16 nucleotides

Bulged bases

8P09|1|2|C|749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P09|1|2|U|743
8P09|1|2|C|744
8P09|1|2|U|745
8P09|1|2|C|746
8P09|1|2|G|747
8P09|1|2|G|748
8P09|1|2|C|749
8P09|1|2|G|750
8P09|1|2|C|751
*
8P09|1|2|G|785
8P09|1|2|C|786
8P09|1|2|C|787
8P09|1|2|C|788
8P09|1|2|G|789
8P09|1|2|A|790
8P09|1|2|A|791

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6