IL_8P09_109

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACCCCC*GGCGUC

Length

13 nucleotides

Bulged bases

8P09|1|2|U|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P09|1|2|G|1409
8P09|1|2|A|1410
8P09|1|2|C|1411
8P09|1|2|C|1412
8P09|1|2|C|1413
8P09|1|2|C|1414
8P09|1|2|C|1415
*
8P09|1|2|G|1424
8P09|1|2|G|1425
8P09|1|2|C|1426
8P09|1|2|G|1427
8P09|1|2|U|1428
8P09|1|2|C|1429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS9

Chain V

40S ribosomal protein eS19