IL_8P09_112

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_112 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.3192

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8P09|1|2|G|1266
8P09|1|2|C|1267
8P09|1|2|C|1268
*
8P09|1|2|G|1506
8P09|1|2|U|1507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein eS10

Chain R

40S ribosomal protein uS19

Chain e

40S ribosomal protein S29

Chain f

ribosomal protein eS31