IL_8P16_137

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P16_137 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1128

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8P16|1|2|U|409
8P16|1|2|G|410
8P16|1|2|A|411
8P16|1|2|A|412
8P16|1|2|G|413
8P16|1|2|A|414
8P16|1|2|A|415
8P16|1|2|G|416
*
8P16|1|2|U|427
8P16|1|2|G|428
8P16|1|2|U|429
8P16|1|2|A|430
8P16|1|2|A|431
8P16|1|2|A|432
8P16|1|2|G|433

Current chains

Chain 2

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS4