IL_8P16_154

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P16_154 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8P16|1|2|C|779
8P16|1|2|A|780
8P16|1|2|A|781
8P16|1|2|A|782
8P16|1|2|C|783
*
8P16|1|2|G|799
8P16|1|2|G|800
8P16|1|2|U|801
8P16|1|2|A|802
8P16|1|2|G|803

Current chains

Chain 2

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

Small ribosomal subunit protein uS11

Chain z

Small ribosomal subunit protein bS21