IL_8P17_127

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_127 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.071

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8P17|1|2|C|132
8P17|1|2|U|133
8P17|1|2|G|134
8P17|1|2|C|135
8P17|1|2|C|136
*
8P17|1|2|G|227
8P17|1|2|A|228
8P17|1|2|U|229
8P17|1|2|G|230

Current chains

Chain 2

16S RNA

Nearby chains

Chain u

Small ribosomal subunit protein bS16

Chain y

Small ribosomal subunit protein bS20