IL_8P17_137

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_137 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1261

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8P17|1|2|U|409
8P17|1|2|G|410
8P17|1|2|A|411
8P17|1|2|A|412
8P17|1|2|G|413
8P17|1|2|A|414
8P17|1|2|A|415
8P17|1|2|G|416
*
8P17|1|2|U|427
8P17|1|2|G|428
8P17|1|2|U|429
8P17|1|2|A|430
8P17|1|2|A|431
8P17|1|2|A|432
8P17|1|2|G|433

Current chains

Chain 2

16S RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS4