IL_8P17_141

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_141 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0592

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8P17|1|2|C|504
8P17|1|2|G|505
8P17|1|2|G|506
8P17|1|2|C|507
8P17|1|2|U|508
8P17|1|2|A|509
8P17|1|2|A|510
8P17|1|2|C|511
*
8P17|1|2|G|540
8P17|1|2|G|541

Current chains

Chain 2

16S RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS4

Chain q

Small ribosomal subunit protein uS12