IL_8P17_178

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_178 not in the Motif Atlas

Homologous match to IL_4LFB_059

Geometric discrepancy: 0.0747

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8P17|1|2|C|1412
8P17|1|2|A|1413
8P17|1|2|U|1414
*
8P17|1|2|G|1486
8P17|1|2|G|1487
8P17|1|2|G|1488

Current chains

Chain 2

16S RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain q

Small ribosomal subunit protein uS12