IL_8P18_078
3D structure
- PDB id
- 8P18 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E167K RF2 on E. coli 70S release complex with UGG (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8P18|1|1|A|1938, 8P18|1|1|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P18_078 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.0781
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8P18|1|1|C|1934
8P18|1|1|G|1935
8P18|1|1|A|1936
8P18|1|1|A|1937
8P18|1|1|A|1938
8P18|1|1|5MU|1939
8P18|1|1|U|1940
8P18|1|1|C|1941
8P18|1|1|C|1942
8P18|1|1|U|1943
8P18|1|1|U|1944
8P18|1|1|G|1945
*
8P18|1|1|C|1961
8P18|1|1|5MC|1962
8P18|1|1|U|1963
8P18|1|1|G|1964
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Peptide chain release factor RF2
- Chain B
- 50S ribosomal protein L2
Coloring options: