IL_8P18_171

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P18_171 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1292

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8P18|1|2|C|1158
8P18|1|2|U|1159
8P18|1|2|G|1160
8P18|1|2|C|1161
*
8P18|1|2|G|1175
8P18|1|2|A|1176
8P18|1|2|G|1177
8P18|1|2|G|1178
8P18|1|2|A|1179
8P18|1|2|A|1180
8P18|1|2|G|1181

Current chains

Chain 2

16S rRNA

Nearby chains

Chain g

Small ribosomal subunit protein uS2

Chain n

Small ribosomal subunit protein uS9