IL_8P2F_008

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0646

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8P2F|1|A|C|241
8P2F|1|A|U|242
8P2F|1|A|U|243
8P2F|1|A|A|244
8P2F|1|A|G|245
8P2F|1|A|U|246
8P2F|1|A|A|247
8P2F|1|A|G|248
*
8P2F|1|A|C|256
8P2F|1|A|G|257
8P2F|1|A|A|258
8P2F|1|A|A|259
8P2F|1|A|A|260
8P2F|1|A|C|261
8P2F|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15