IL_8P2F_030

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_030 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.089

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8P2F|1|A|G|909
8P2F|1|A|C|910
8P2F|1|A|A|911
8P2F|1|A|C|912
8P2F|1|A|U|913
*
8P2F|1|A|A|954
8P2F|1|A|A|955
8P2F|1|A|A|956
8P2F|1|A|C|957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16