IL_8P2F_153

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8P2F|1|a|A|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_153 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.0505

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8P2F|1|a|G|931
8P2F|1|a|A|932
*
8P2F|1|a|U|1403
8P2F|1|a|A|1404
8P2F|1|a|C|1405

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S5