IL_8P2G_050

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

8P2G|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_050 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.095

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8P2G|1|A|G|1356
8P2G|1|A|G|1357
8P2G|1|A|A|1358
8P2G|1|A|A|1359
8P2G|1|A|G|1360
*
8P2G|1|A|C|1368
8P2G|1|A|G|1369
8P2G|1|A|C|1370

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain W

50S ribosomal protein L23