IL_8P2G_065

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8P2G|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_065 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0509

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8P2G|1|A|A|1713
8P2G|1|A|C|1714
8P2G|1|A|U|1715
8P2G|1|A|C|1716
8P2G|1|A|G|1717
8P2G|1|A|G|1718
*
8P2G|1|A|C|2017
8P2G|1|A|U|2018
8P2G|1|A|G|2019
8P2G|1|A|U|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14