IL_8P2G_096

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_096 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.0903

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8P2G|1|A|C|2493
8P2G|1|A|C|2494
8P2G|1|A|A|2495
8P2G|1|A|A|2496
8P2G|1|A|G|2497
*
8P2G|1|A|C|2507
8P2G|1|A|G|2508
8P2G|1|A|A|2509
8P2G|1|A|C|2510
8P2G|1|A|G|2511

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain P

50S ribosomal protein L16