3D structure

PDB id
8P2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
CA*UACG
Length
6 nucleotides
Bulged bases
8P2G|1|A|A|2599, 8P2G|1|A|C|2600
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P2G_099 not in the Motif Atlas
Homologous match to IL_5J7L_341
Geometric discrepancy: 0.064
The information below is about IL_5J7L_341
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

8P2G|1|A|C|2539
8P2G|1|A|A|2540
*
8P2G|1|A|U|2598
8P2G|1|A|A|2599
8P2G|1|A|C|2600
8P2G|1|A|G|2601

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain H
50S ribosomal protein L3
Chain M
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1019 s