IL_8P2G_133

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

8P2G|1|a|U|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_133 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.0917

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8P2G|1|a|U|375
8P2G|1|a|U|376
8P2G|1|a|C|377
*
8P2G|1|a|G|400
8P2G|1|a|A|401

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain E

Elongation factor G

Chain q

30S ribosomal protein S16