IL_8P2G_137

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGAAG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_137 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.2017

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8P2G|1|a|G|454
8P2G|1|a|G|455
8P2G|1|a|A|456
8P2G|1|a|A|457
8P2G|1|a|G|458
*
8P2G|1|a|C|491
8P2G|1|a|G|492
8P2G|1|a|G|493
8P2G|1|a|U|494
8P2G|1|a|A|495
8P2G|1|a|C|496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16