IL_8P2H_008

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.066

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8P2H|1|A|C|241
8P2H|1|A|U|242
8P2H|1|A|U|243
8P2H|1|A|A|244
8P2H|1|A|G|245
8P2H|1|A|U|246
8P2H|1|A|A|247
8P2H|1|A|G|248
*
8P2H|1|A|C|256
8P2H|1|A|G|257
8P2H|1|A|A|258
8P2H|1|A|A|259
8P2H|1|A|A|260
8P2H|1|A|C|261
8P2H|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15