IL_8P2H_052

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_052 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.132

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8P2H|1|A|U|1394
8P2H|1|A|G|1395
8P2H|1|A|A|1396
8P2H|1|A|G|1397
8P2H|1|A|G|1398
*
8P2H|1|A|C|1407
8P2H|1|A|G|1408
8P2H|1|A|U|1409
8P2H|1|A|A|1410
8P2H|1|A|G|1411

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2