IL_8P2H_069

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

8P2H|1|A|U|1828, 8P2H|1|A|U|1843, 8P2H|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0545

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8P2H|1|A|U|1825
8P2H|1|A|G|1826
8P2H|1|A|C|1827
8P2H|1|A|U|1828
8P2H|1|A|A|1829
8P2H|1|A|A|1830
8P2H|1|A|A|1831
*
8P2H|1|A|U|1840
8P2H|1|A|G|1841
8P2H|1|A|A|1842
8P2H|1|A|U|1843
8P2H|1|A|G|1844
8P2H|1|A|U|1845
8P2H|1|A|A|1846
8P2H|1|A|U|1847
8P2H|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA