IL_8P2H_072

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_072 not in the Motif Atlas

Homologous match to IL_5J7L_316

Geometric discrepancy: 0.2112

The information below is about IL_5J7L_316

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

8P2H|1|A|G|1873
8P2H|1|A|A|1874
8P2H|1|A|A|1875
8P2H|1|A|G|1876
*
8P2H|1|A|C|1920
8P2H|1|A|C|1921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA