IL_8P2H_094

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_094 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.0848

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8P2H|1|A|A|2486
8P2H|1|A|U|2487
8P2H|1|A|C|2488
*
8P2H|1|A|G|2516
8P2H|1|A|G|2517
8P2H|1|A|U|2518
8P2H|1|A|U|2519
8P2H|1|A|U|2520

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16