IL_8P2H_097

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8P2H|1|A|G|2603, 8P2H|1|A|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_097 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0787

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8P2H|1|A|C|2537
8P2H|1|A|U|2538
8P2H|1|A|C|2539
*
8P2H|1|A|G|2601
8P2H|1|A|C|2602
8P2H|1|A|G|2603
8P2H|1|A|A|2604
8P2H|1|A|G|2605

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain H

50S ribosomal protein L3