IL_8P2H_135

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_135 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1628

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8P2H|1|a|U|417
8P2H|1|a|G|418
8P2H|1|a|A|419
8P2H|1|a|U|420
8P2H|1|a|G|421
8P2H|1|a|A|422
8P2H|1|a|A|423
8P2H|1|a|G|424
*
8P2H|1|a|C|435
8P2H|1|a|G|436
8P2H|1|a|U|437
8P2H|1|a|A|438
8P2H|1|a|A|439
8P2H|1|a|A|440
8P2H|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4