IL_8P2H_138

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_138 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0902

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8P2H|1|a|C|512
8P2H|1|a|G|513
8P2H|1|a|G|514
8P2H|1|a|C|515
8P2H|1|a|U|516
8P2H|1|a|A|517
8P2H|1|a|A|518
8P2H|1|a|C|519
*
8P2H|1|a|G|548
8P2H|1|a|G|549

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12