IL_8P2H_140

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8P2H|1|a|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_140 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0616

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8P2H|1|a|C|577
8P2H|1|a|G|578
8P2H|1|a|U|579
8P2H|1|a|A|580
8P2H|1|a|A|581
8P2H|1|a|A|582
8P2H|1|a|G|583
*
8P2H|1|a|C|889
8P2H|1|a|G|890

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S5

Chain m

30S ribosomal protein S12

Chain r

30S ribosomal protein S17