3D structure

PDB id
8P2H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.49 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P2H_166 not in the Motif Atlas
Homologous match to IL_5J7L_050
Geometric discrepancy: 0.0948
The information below is about IL_5J7L_050
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8P2H|1|a|G|1072
8P2H|1|a|U|1073
8P2H|1|a|C|1074
*
8P2H|1|a|G|1203
8P2H|1|a|U|1204
8P2H|1|a|C|1205

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S3
Chain f
30S ribosomal protein S5
Chain k
Small ribosomal subunit protein uS10
Chain o
30S ribosomal protein S14 type Z

Coloring options:


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