IL_8P2H_172

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAAA*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_172 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1462

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8P2H|1|a|C|1269
8P2H|1|a|G|1270
8P2H|1|a|A|1271
8P2H|1|a|A|1272
8P2H|1|a|A|1273
*
8P2H|1|a|U|1282
8P2H|1|a|C|1283
8P2H|1|a|A|1284
8P2H|1|a|A|1285
8P2H|1|a|G|1286

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S19