IL_8P2K_011

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8P2K|1|A2|G|113, 8P2K|1|A2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_011 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.1511

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8P2K|1|A2|U|112
8P2K|1|A2|G|113
8P2K|1|A2|G|114
8P2K|1|A2|U|115
*
8P2K|1|A2|A|349
8P2K|1|A2|A|350

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11