IL_8P2K_016

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_016 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3961

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8P2K|1|A2|C|188
8P2K|1|A2|U|189
8P2K|1|A2|G|190
8P2K|1|A2|A|191
8P2K|1|A2|C|192
*
8P2K|1|A2|G|207
8P2K|1|A2|G|208
8P2K|1|A2|A|209
8P2K|1|A2|PSU|210
8P2K|1|A2|G|211

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8