IL_8P2K_023

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_023 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.131

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8P2K|1|A2|G|412
8P2K|1|A2|G|413
8P2K|1|A2|G|414
*
8P2K|1|A2|C|425
8P2K|1|A2|G|426
8P2K|1|A2|A|427
8P2K|1|A2|U|428
8P2K|1|A2|OMU|429
8P2K|1|A2|C|430

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23